Z_4_18 — Protein Misfolding and Prion Diseases

Prion diseases — transmissible spongiform encephalopathies (TSEs) — are fatal neurodegenerative disorders caused by the misfolding and self-propagating aggregation of a normal cellular protein (PrPᶜ) into a pathological

Z_4_17 — Non-coding RNA Networks: Regulation Beyond the Genome

Non-coding RNAs (ncRNAs) — RNA molecules that are not translated into protein but perform functional roles in the cell — have emerged since the late 1990s as a vast and previously unsuspected layer of biological regulati

Z_4_00 — RNA Protein Cell Biology: Subfolder Summary

Z_4_06 — Psychedelic Neurochemistry: 5-HT2A, Tryptamines, and Molecular Mechanisms

Psychedelic neurochemistry — the molecular-level study of how psychedelic compounds alter brain function to produce their characteristic effects (visual hallucinations, synesthesia, ego dissolution, mystical-type experie

Z_4_09 — Protein Folding: From Anfinsen's Dogma to AlphaFold

Protein folding — the process by which a linear chain of amino acids spontaneously adopts its specific three-dimensional structure — is one of the most fundamental problems in molecular biology and has been called the "s

Z_4_04 — RNA Biology: Types and Functions

RNA (ribonucleic acid) — once considered merely a passive intermediary between DNA and protein — is now recognized as the most functionally diverse class of biological macromolecules, performing roles in catalysis, gene

Z_4_07 — The Tree of Life: Molecular Phylogenetics and Universal Ancestry

The Tree of Life — the branching diagram representing the evolutionary relationships among all living organisms — has been fundamentally reshaped by molecular phylogenetics, the reconstruction of evolutionary history usi

Z_4_01 — Human Microbiome, Gut-Brain Axis, and the Holobiont Concept

The human microbiome — the ~38 trillion microbial cells (bacteria, archaea, fungi, viruses) inhabiting the human body — constitutes a co-evolved ecosystem that profoundly influences health, immunity, metabolism, developm

Z_4_03 — Forensic Genetics and DNA Identification

Forensic genetics uses DNA analysis to identify individuals, establish biological relationships, and solve criminal cases — a revolution that began when Sir Alec Jeffreys (1984, University of Leicester) discovered DNA fi

Z_4_14 — RNA Interference: Gene Silencing by Small RNAs

RNA interference (RNAi) — the process by which small double-stranded RNA molecules silence gene expression by targeting complementary messenger RNA (mRNA) for degradation or translational repression — is one of the most

K_3_02 — Embodied Cognition

Embodied cognition is a broad research program challenging the classical cognitive science view that the mind is essentially a computer processing abstract symbols in the brain. Instead, embodied cognition holds that thi

K_3_05 — Extended Mind and Cognitive Extension

The extended mind thesis (EMT), proposed by Andy Clark and David Chalmers in their landmark 1998 paper "The Extended Mind," argues that cognitive processes need not be confined within the skull — external objects, tools,

K_3_16 — Anesthesia and Consciousness: What Going Under Reveals

General anesthesia provides a unique experimental window into consciousness: the ability to reversibly abolish and restore awareness in a controlled clinical setting. Despite over 175 years of practice since William T.G.

K_3_14 — Consciousness in Octopuses and Distributed Nervous Systems

Octopuses (Octopus vulgaris, O. bimaculoides, Abdopus aculeatus, and ~300 other species in order Octopoda) represent perhaps the most profound natural experiment in the evolution of consciousness: they are the most cogni

K_3_15 — Anesthesia and the Mechanisms of Consciousness Loss

General anesthesia — the reversible abolition of consciousness through pharmacological agents — is one of the most remarkable phenomena in medicine: it routinely eliminates subjective experience in millions of patients d

K_3_12 — Blindsight and Unconscious Vision: Seeing Without Awareness

Blindsight is a neurological phenomenon in which individuals who are cortically blind — having lost conscious visual experience in part or all of their visual field due to damage to the primary visual cortex (V1/striate

K_3_13 — Coma, Vegetative State, and Minimally Conscious State: Clinical Boundaries

Disorders of consciousness (DoC) — clinical conditions in which awareness (the content of consciousness — perception, thought, experience) and/or arousal (the level of wakefulness — eyes open, sleep-wake cycles) are seve

K_3_17 — Psychedelic Consciousness — DMT, Psilocybin Neural Effects

The psychedelic renaissance in neuroscience — a period of renewed scientific investigation beginning circa 2006 after decades of regulatory restriction — has produced an unprecedented body of neuroimaging, pharmacologica

K_3_11 — Animal Consciousness and Sentience

The question of whether non-human animals possess conscious experience — subjective awareness, felt pain, emotions, and self-recognition — has moved from philosophical speculation to a major neuroscientific research prog

K_3_07 — Evolution of Consciousness

The question of when, how, and why consciousness evolved is one of the deepest unsolved problems at the intersection of biology, neuroscience, and philosophy. Two major recent proposals have attempted to identify the evo