RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

101 results for "molecular phylogeny" — page 5 of 6

Z_4_12 Verified Molecular Biology

Z_4_12 — Autophagy: The Cell's Self-Eating Recycling System

Autophagy (from Greek auto "self" + phagein "to eat") — the process by which cells degrade and recycle their own components — is a fundamental cellular quality control and survival mechanism conserved from yeast to human

autophagy Ohsumi lysosome mTOR autophagosome protein degradation
Z_4_10 Verified Molecular Biology

Z_4_10 — Signal Transduction: How Cells Communicate

Signal transduction — the molecular mechanisms by which cells detect, interpret, and respond to external signals (hormones, growth factors, neurotransmitters, cytokines, environmental cues) — is one of the central organi

signal transduction cell signaling receptor kinase second messenger G protein
Z_4_11 Verified Molecular Biology

Z_4_11 — The Cell Cycle: Division, Checkpoints, and Cancer

The cell cycle — the ordered series of events by which a cell grows, replicates its DNA, and divides into two daughter cells — is one of the most fundamental processes in biology and one of the most intensively studied i

cell cycle mitosis CDK cyclin checkpoint p53
Z_4_14 Verified Molecular Biology

Z_4_14 — RNA Interference: Gene Silencing by Small RNAs

RNA interference (RNAi) — the process by which small double-stranded RNA molecules silence gene expression by targeting complementary messenger RNA (mRNA) for degradation or translational repression — is one of the most

RNA interference RNAi siRNA miRNA gene silencing Fire
ZG_3_02 Verified Linguistics & Communication

ZG_3_02 — FOXP2 and the Genetics of Language

FOXP2 (Forkhead Box Protein P2) is the first gene directly linked to human speech and language ability, located on chromosome 7q31 and encoding a transcription factor that regulates hundreds of downstream genes involved

FOXP2 KE family speech language gene transcription factor chromosome 7
ZB_2_21 Verified Ecology & Biology

ZB_2_21 — Horizontal Gene Transfer & Microbial Evolution

Horizontal gene transfer (HGT) — also called lateral gene transfer (LGT) — is the transmission of genetic material between organisms by mechanisms other than parent-to-offspring (vertical) inheritance. HGT is the dominan

horizontal gene transfer lateral gene transfer conjugation transduction transformation mobile genetic elements
ZB_2_19 Verified Ecology & Biology

ZB_2_19 — Epigenetics & Chromatin Modification

Epigenetics — literally "above genetics" — encompasses heritable changes in gene expression that occur without alterations to the DNA sequence itself. The term was coined by Conrad Hal Waddington in 1942 to describe how

epigenetics DNA methylation histone modification chromatin remodeling gene expression transgenerational inheritance
ZB_5_07 Verified Ecology & Biology

ZB_5_07 — Chronobiology: Biological Clocks and Temporal Ecology

Chronobiology — the study of biological rhythms and their underlying molecular, physiological, and ecological mechanisms — reveals that nearly all living organisms, from cyanobacteria to humans, possess endogenous biolog

chronobiology circadian rhythm biological clock suprachiasmatic nucleus melatonin photoperiodism
L_4_10 Verified Genetics & Origins

L_4_10 — Sex Chromosome Evolution

Sex chromosomes — the genetic elements that determine biological sex in many organisms — represent one of the most remarkable stories in genome evolution. In mammals, the XX/XY system prevails: females have two X chromos

sex chromosome X chromosome Y chromosome sex determination SRY dosage compensation
L_4_15 Verified Genetics & Origins

L_4_15 — Y-Chromosome and mtDNA Mismatch Patterns in Human Populations

The Y chromosome (paternally inherited, non-recombining) and mitochondrial DNA (maternally inherited) provide independent genealogical records of male and female lineage histories, respectively. When these two markers te

y-chromosome mitochondrial-dna sex-biased-migration patrilocality matrilocality haplogroup
L_3_17 Verified Genetics & Origins

L_3_17 — Endogenous Retroviruses (HERVs) in the Human Genome

Human endogenous retroviruses (HERVs) — remnants of ancient retroviral infections that integrated into the germline DNA of human ancestors and have been vertically transmitted through the host genome for millions of year

endogenous retroviruses HERVs HERV-K HERV-W syncytin retroviral integration
L_3_10 Verified Genetics & Origins

L_3_10 — Telomeres Aging and Longevity Genetics

Telomeres — the repetitive DNA sequences (TTAGGG in vertebrates) capping the ends of linear chromosomes — protect genome integrity by preventing chromosome ends from being recognized as double-strand breaks and triggerin

telomere telomerase aging senescence Hayflick limit shelterin
L_5_16 Verified Genetics & Origins

L_5_16 — Archaeogenetics: Ancient DNA and the Human Past

Archaeogenetics — the extraction and analysis of DNA from ancient human, animal, and plant remains — has transformed our understanding of human history since the field's breakthrough in 2010. Advances in next-generation

archaeogenetics ancient DNA aDNA paleogenomics Svante Pääbo David Reich
L_5_14 Verified Genetics & Origins

L_5_14 — Amino Acid Racemization Dating Method

Amino acid racemization (AAR) — a geochronological dating technique based on the chemical conversion of L-amino acids (the biologically predominant enantiomer in living organisms) to D-amino acids (the mirror-image confi

amino acid racemization AAR dating method D/L ratio enantiomers isoleucine epimerization
R_4_18 Verified Biology & Evolution

R_4_18 — Virology and Viral Evolution

Virology — the study of viruses, their structure, classification, evolution, and interactions with hosts — has undergone a revolution since the development of high-throughput sequencing, revealing that viruses are the mo

virology viral evolution RNA virus DNA virus quasispecies zoonosis
R_4_07 Verified Biology & Evolution

R_4_07 — Venom Evolution and Biochemical Arms Races

Venom — a cocktail of bioactive molecules injected via a specialized delivery apparatus (fangs, stingers, harpoons, nematocysts, spurs) to subdue prey, deter predators, or aid in competition — has evolved independently o

venom toxin snake venom spider venom cone snail conotoxin
R_4_00 Biology & Evolution

R_4_00 — Organismal Systems: Subfolder Summary

R_3_20 Verified Biology & Evolution

R_3_20 — CRISPR & Gene Editing Technology

CRISPR-Cas9 is the most transformative biological technology since PCR, enabling precise, programmable editing of DNA in virtually any organism. The system was adapted from a bacterial immune defense mechanism first iden

CRISPR Cas9 gene editing genome engineering Jennifer Doudna Emmanuelle Charpentier
R_3_13 Verified Biology & Evolution

R_3_13 — Evolution of the Immune System

The immune system is one of evolution's most elaborate and costly creations — vertebrate adaptive immunity alone employs V(D)J recombination to generate over 10¹¹ distinct antibody specificities from fewer than 400 gene

immune system innate immunity adaptive immunity immunoglobulin T cell B cell
ZA_1_15 Credible Physics & Quantum

ZA_1_15 — Quantum Biology Revisited: Quantum Effects in Living Systems

Quantum biology investigates whether non-trivial quantum-mechanical effects — coherence, entanglement, tunneling, and superposition — play functional roles in biological processes, rather than being washed out by the war

quantum biology photosynthesis coherence magnetoreception enzyme tunneling olfaction FMO complex