RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

396 results for "genome evolution" — page 5 of 20

Z_5_11 Verified Molecular Biology

Z_5_11 — Microbiome-Host Coevolution: Holobiont Theory, Gut Ecology, and Metabolic Symbiosis

Microbiome-host coevolution refers to the deep, reciprocal evolutionary relationship between multicellular organisms and the complex microbial communities (bacteria, archaea, fungi, viruses) that inhabit their bodies — p

microbiome gut microbiota holobiont dysbiosis fecal microbiota transplant FMT
Z_5_07 Verified Molecular Biology

Z_5_07 — Epigenome Mapping: Charting the Chemical Modifications of DNA and Chromatin

Epigenome mapping — the systematic, genome-wide identification and quantification of epigenetic modifications (chemical marks on DNA and histone proteins that regulate gene expression without changing the underlying DNA

epigenome DNA methylation bisulfite sequencing ATAC-seq ChIP-seq histone modification
Z_1_03 Verified Molecular Biology

Z_1_03 — Human Genome Project and Its Legacy

The Human Genome Project (HGP), launched in 1990 and completed in 2003, was the largest coordinated biological research effort in history — a $3 billion, 13-year international collaboration to sequence all ~3.2 billion b

Human Genome Project HGP genome sequencing Francis Collins Craig Venter Celera
Z_1_12 Verified Molecular Biology

Z_1_12 — Genome Architecture and 3D Organization

The human genome — approximately 6.4 billion base pairs of DNA — is packed into a nucleus only ~6 μm in diameter. If stretched end-to-end, the DNA of a single human cell would extend about 2 meters, yet it is packaged an

genome architecture 3D genome chromatin organization topologically associating domains TADs chromosome territories
Z_4_05 Verified Molecular Biology

Z_4_05 — Synthetic Biology and Minimal Genomes

Synthetic biology aims to design, construct, and engineer biological systems and organisms with novel functions not found in nature — or to redesign existing biological systems for useful purposes. The field's landmark a

synthetic biology minimal genome JCVI-syn3.0 Mycoplasma mycoides synthetic cell Venter
G_3_20 Verified Modern Frameworks

G_3_20 — Kuhn's Paradigm Shifts: The Structure of Scientific Revolutions

Thomas S. Kuhn's The Structure of Scientific Revolutions (1962) introduced the concept of the paradigm shift — the idea that science does not progress by linear accumulation of facts, but through periodic, discontinuous

paradigm shift Kuhn scientific revolution normal science anomaly incommensurability
G_2_08 Verified Modern Frameworks

G_2_08 — Archaeogenetics — DNA Revolution in Prehistory

Archaeogenetics — the extraction and analysis of ancient DNA (aDNA) from archaeological human, animal, and plant remains — has revolutionized our understanding of human migration, population structure, admixture, kinship

archaeogenetics ancient DNA aDNA paleogenomics genome migration
O_2_08 Verified Earth Anomalies

O_2_08 — Weathering, Erosion, and Deep Time Landscape Evolution

Weathering (the in-situ breakdown of rock and minerals) and erosion (the transport of weathered material by water, wind, ice, and gravity) are the fundamental surface processes that, operating over deep time (millions to

weathering erosion geomorphology denudation chemical weathering physical weathering
T_5_25 Verified Psychology & Social

T_5_25 — Cognitive Evolution: The Development of Human Mental Capacities

Cognitive evolution — the study of how human mental capacities emerged and developed over evolutionary time — addresses one of the deepest questions in science: how did a lineage of African primates develop language, sym

cognitive evolution brain evolution encephalization theory of mind language evolution symbolic thought
L_1_10 Verified Genetics & Origins

L_1_10 — Neanderthal Genome and Legacy in Modern Humans

The sequencing of the Neanderthal genome ranks among the most significant achievements in modern biology. Beginning with the draft genome of Green et al. (2010) and refined by later high-coverage genomes from the Altai,

Neanderthal genome Neanderthal admixture archaic introgression Vindija Altai Neanderthal Homo neanderthalensis
H_2_11 Verified Suppression & Thesis

H_2_11 — Scientific Revolutions: Kuhn, Paradigm Shifts, and Resistance

Thomas Kuhn's The Structure of Scientific Revolutions (1962) fundamentally altered understanding of how science changes by arguing that scientific progress is not a smooth, cumulative accumulation of knowledge but rather

paradigm shift scientific revolution Kuhn Lakatos Popper normal science
H_1_11 Verified Suppression & Thesis

H_1_11 — Chinese Cultural Revolution — Destruction of the Four Olds

The Chinese Cultural Revolution (1966–1976) unleashed one of history's most devastating campaigns of deliberate cultural destruction. Launched by Mao Zedong to reassert ideological control and purge perceived enemies, th

cultural revolution four olds mao zedong red guards destruction heritage struggle session
R_3_17 Verified Biology & Evolution

R_3_17 — Neoteny & Heterochrony: Developmental Timing in Evolution

Heterochrony — evolutionary change in the timing or rate of developmental processes — is one of the most powerful mechanisms by which organisms evolve new morphologies without requiring entirely new genetic programs. The

neoteny heterochrony paedomorphosis peramorphosis Stephen Jay Gould developmental timing
S_1_13 Verified Future Technology

S_1_13 — Human-AI Collaboration and Coevolution

Human-AI collaboration refers to the partnership between human cognitive strengths (intuition, creativity, ethical judgment, contextual understanding, emotional intelligence) and AI capabilities (speed, pattern recogniti

human-AI collaboration centaur chess AI augmentation hybrid intelligence coevolution AI alignment
F_3_01 Verified Lost Connections

F_3_01 — The Agricultural Revolution

The Agricultural Revolution (~10,000 BCE) — the transition from hunting-gathering to farming — is arguably the most consequential event in human history. It enabled cities, writing, religion, states, armies, and eventual

Neolithic Revolution agriculture domestication sedentism Fertile Crescent Natufian
V_4_28 Verified Mathematics & Information

V_4_28 — Game Theory: Strategic Decision-Making and Evolutionary Dynamics

Game theory — the mathematical study of strategic interaction among rational agents — was formalized by John von Neumann and Oskar Morgenstern in Theory of Games and Economic Behavior (1944) and transformed by John Nash'

game theory nash equilibrium prisoner's dilemma evolutionary game theory john von neumann john nash
Verified

INTERDOC_74 — Transgenerational Epigenetic Inheritance: Confirmed Mechanisms and Honest Limits

[KEY FINDING] Specific environmentally-induced epigenetic states (notably from severe famine and from controlled fear-conditioning paradigms) can survive embryonic reprogramming and influence offspring phenotype across o

epigenetic inheritance DNA methylation Dutch Hunger Winter intergenerational trauma FKBP5 IGF2
W_1_09 Verified World Civilizations

W_1_09 — Canaanite Religion Beyond Ugarit — El, Asherah, and Ba'al in the Iron Age

- [Quick Summary](#quick-summary)

Canaanite El Elohim Asherah Ba'al Yahweh
C_3_02 Verified Global Traditions

C_3_02 — Language Origins and the Tower of Babel

How did language begin? This is "the hardest problem in science" (Christiansen & Kirby 2003). The Linguistic Society of Paris banned all papers on language origins in 1866 because the topic produced more speculation than

language origins Tower of Babel Chomsky universal grammar FOXP2 Proto-World
ZF_2_13 Verified Oceanography

ZF_2_13 — Marine Invertebrate Diversity — Cnidarians, Echinoderms, Mollusks

Marine invertebrates — animals without backbones — constitute the vast majority of animal diversity in the ocean: of ~230,000 described marine animal species, approximately 195,000 (85%) are invertebrates, spanning more

marine invertebrate cnidaria echinoderm mollusk coral jellyfish