RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

64 results for "genome assembly" — page 3 of 4

L_3_06 Credible Genetics & Origins

L_3_06 — Genetics of Intelligence and Cognition

The genetics of intelligence — one of the most studied yet contentious areas in behavioral genetics — has established that cognitive ability, as measured by standardized tests, has a substantial heritable component (~50–

intelligence genetics cognitive ability IQ heritability GWAS intelligence polygenic score educational attainment
L_3_17 Verified Genetics & Origins

L_3_17 — Endogenous Retroviruses (HERVs) in the Human Genome

Human endogenous retroviruses (HERVs) — remnants of ancient retroviral infections that integrated into the germline DNA of human ancestors and have been vertically transmitted through the host genome for millions of year

endogenous retroviruses HERVs HERV-K HERV-W syncytin retroviral integration
L_3_10 Verified Genetics & Origins

L_3_10 — Telomeres Aging and Longevity Genetics

Telomeres — the repetitive DNA sequences (TTAGGG in vertebrates) capping the ends of linear chromosomes — protect genome integrity by preventing chromosome ends from being recognized as double-strand breaks and triggerin

telomere telomerase aging senescence Hayflick limit shelterin
L_5_05 Verified Genetics & Origins

L_5_05 — Epigenetic Clocks: Measuring Biological Age

Epigenetic clocks are mathematical models that estimate biological age — the physiological age of an organism's cells and tissues — based on DNA methylation patterns at specific CpG sites (regions where a cytosine nucleo

epigenetic clock DNA methylation biological age Horvath clock Hannum clock GrimAge
R_3_12 Verified Biology & Evolution

R_3_12 — Evolution of Sex and Reproduction

Sex — the rearrangement of genetic material from two parents to produce genetically unique offspring — is one of the most fundamental yet puzzling features of life. Sexual reproduction involves enormous costs: the "twofo

evolution of sex sexual reproduction asexual reproduction meiosis recombination Red Queen hypothesis
R_3_02 Verified Biology & Evolution

R_3_02 — Horizontal Gene Transfer in Complex Life

For decades, the "tree of life" was the central metaphor of evolutionary biology — species branching neatly from common ancestors through vertical gene transmission (parent to offspring). This metaphor is now BROKEN, at

horizontal gene transfer HGT lateral gene transfer LGT endosymbiosis mitochondria
R_3_20 Verified Biology & Evolution

R_3_20 — CRISPR & Gene Editing Technology

CRISPR-Cas9 is the most transformative biological technology since PCR, enabling precise, programmable editing of DNA in virtually any organism. The system was adapted from a bacterial immune defense mechanism first iden

CRISPR Cas9 gene editing genome engineering Jennifer Doudna Emmanuelle Charpentier
R_3_15 Verified Biology & Evolution

R_3_15 — Epigenetics and Lamarckian Inheritance: Transgenerational Mechanisms Beyond DNA Sequence

Epigenetics — the study of heritable changes in gene expression that occur without alteration to the underlying DNA sequence — has fundamentally reshaped modern biology since the term was coined by Conrad Hal Waddington

epigenetics DNA methylation histone modification transgenerational inheritance Lamarckian inheritance epigenome
R_2_14 Verified Biology & Evolution

R_2_14 — Recent Human Evolution: Lactase Persistence, Altitude Adaptation, and Malaria Resistance

Human evolution did not stop with the emergence of Homo sapiens ~300,000 years ago — natural selection has continued to shape human biology in response to agriculture, diet, disease, climate, and altitude, producing some

recent human evolution lactase persistence LCT gene altitude adaptation EPAS1 HIF pathway
R_2_03 Verified Biology & Evolution

R_2_03 — Neanderthal Cognition and Interbreeding

For over a century, Neanderthals were depicted as brutish, cognitively inferior "cave men" — a failed evolutionary experiment replaced by superior modern humans. This narrative has been DEMOLISHED by 21st-century genetic

Neanderthal Homo neanderthalensis hybridization interbreeding DNA genome
R_1_07 Verified Biology & Evolution

R_1_07 — Viruses as Evolutionary Drivers — Endogenous Retroviruses and Genomic Integration

Viruses are not merely disease agents — they are fundamental architects of evolution. The human genome contains approximately ~8% endogenous retroviral (ERV) sequences (~100,000 ERV fragments), meaning roughly eight time

virus retrovirus endogenous retrovirus ERV HERV viral DNA
R_1_16 Verified Biology & Evolution

R_1_16 — Endosymbiotic Theory: Modern Developments in Organelle Evolution

Endosymbiotic theory — the proposition that mitochondria and chloroplasts originated as free-living bacteria that were engulfed by ancestral eukaryotic cells and subsequently became obligate intracellular symbionts — is

endosymbiosis Lynn Margulis mitochondria chloroplast eukaryote origin serial endosymbiotic theory
S_5_01 Verified Future Technology

S_5_01 — Nanotechnology, Molecular Machines, and Material Frontiers

Nanotechnology — the manipulation of matter at the 1-100 nanometer scale (1 nm = 10⁻⁹ meters; a human hair is ~80,000 nm wide) — represents a convergence of physics, chemistry, biology, and engineering at the scale where

nanotechnology nanoscale molecular machines nanorobot nanomedicine self-assembly
S_2_04 Verified Future Technology

S_2_04 — Synthetic Biology — Engineering Life from First Principles

Synthetic biology represents the convergence of molecular biology, engineering, and computer science — applying rational design principles to living systems. The field was catalyzed by two landmark achievements: the cons

synthetic biology synbio Craig Venter Mycoplasma mycoides syn1.0 syn3.0
S_2_01 Verified Future Technology

S_2_01 — CRISPR and Human Genetic Engineering

CRISPR-Cas9 is the most transformative biotechnology discovery of the 21st century — a molecular tool that allows precise editing of DNA in any organism, including humans. Discovered in bacteria's immune system against v

CRISPR Cas9 gene editing germline editing He Jiankui somatic editing
F_4_19 Verified Lost Connections

F_4_19 — Denisovan Legacy in Island Southeast Asia and Melanesia

The Denisovans — an archaic hominin group identified in 2010 from ~41,000-year-old fossils found in Denisova Cave (Altai Mountains, Siberia) — left a striking and disproportionate genetic legacy in the populations of Isl

Denisovan Denisova Cave archaic hominin introgression admixture Melanesia
F_4_14 Verified Lost Connections

F_4_14 — Ancient DNA and Migration Evidence

Ancient DNA (aDNA) analysis has transformed the study of human migration and cultural connections, providing direct genetic evidence for population movements that were previously inferred indirectly from archaeology, lin

ancient DNA aDNA archaeogenetics paleogenomics David Reich Johannes Krause
Z_1_13 Verified Molecular Biology

Z_1_13 — DNA Repair Mechanisms and Genome Stability

Every human cell sustains an estimated 10,000–100,000 DNA lesions per day from endogenous sources alone — oxidative metabolism, spontaneous hydrolysis, replication errors, and reactive metabolites — while environmental m

DNA repair base excision repair nucleotide excision repair mismatch repair double-strand break homologous recombination
Z_1_00 Molecular Biology

Z_1_00 — Genome Structure Organization: Subfolder Summary

Z_1_14 Verified Molecular Biology

Z_1_14 — Chromatin Remodeling: Epigenetic Architecture of the Genome

Chromatin remodeling — the dynamic restructuring of the protein-DNA complex (chromatin) that packages eukaryotic genomes — is a central mechanism of gene regulation and a cornerstone of epigenetics. In eukaryotic cells,

chromatin histone nucleosome epigenetics histone modification acetylation