RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

101 results for "molecular phylogeny" — page 2 of 6

U_3_17 Credible Art, Music & Culture

U_3_17 — Culinary Arts and Food Culture: Cuisine as Cultural Expression

Food culture — the practices, beliefs, rituals, and technologies surrounding food production, preparation, and consumption — is one of the most fundamental expressions of human identity, connecting ecology, agriculture,

culinary-arts food-culture gastronomy fermentation spice-trade cuisine-evolution
X_3_16 Verified Medicine & Healing

X_3_16 — Allergy & Autoimmune Disease: Immune Dysregulation and Self-Recognition

Allergy and autoimmune disease represent opposite failures of immune discrimination: allergy is an exaggerated immune response to harmless environmental antigens (allergens), while autoimmune disease involves immune atta

allergy autoimmune disease IgE anaphylaxis hygiene hypothesis type 1 diabetes
Credible

INTERDOC_71 — The NDE Paradox: Consciousness Without Neural Activity & Substrate Independence

The near-death experience (NDE) paradox is the question of whether subjective phenomenology reported during cardiac arrest reflects (a) post-hoc reconstruction during recovery, (b) hidden residual neural activity not cap

near-death experience NDE AWARE study AWARE-II substrate independence bioelectricity
C_5_21 Speculative Global Traditions

C_5_21 — Serpent-DNA Visual Parallels: The Double Helix in Ancient Iconography

Entwined serpent imagery — two serpents coiling around a central axis — appears across civilizations separated by vast distances and millennia: the caduceus of Greek Hermes (two serpents around a winged staff), the Nehus

serpent DNA double helix caduceus entwined serpents Nehushtan
ZF_2_13 Verified Oceanography

ZF_2_13 — Marine Invertebrate Diversity — Cnidarians, Echinoderms, Mollusks

Marine invertebrates — animals without backbones — constitute the vast majority of animal diversity in the ocean: of ~230,000 described marine animal species, approximately 195,000 (85%) are invertebrates, spanning more

marine invertebrate cnidaria echinoderm mollusk coral jellyfish
Z_3_03 Verified Molecular Biology

Z_3_03 — Ancient Pathogen Genomics — Plague, TB, Smallpox DNA

Ancient pathogen genomics — the recovery and sequencing of disease-causing organism DNA from archaeological remains — has revolutionized understanding of human disease history. Beginning with the landmark reconstruction

ancient pathogen paleomicrobiology Yersinia pestis plague Black Death Justinianic plague
Z_3_04 Verified Molecular Biology

Z_3_04 — Comparative Genomics and Cross-Species Analysis

Comparative genomics — the systematic comparison of genome sequences across species — has become the primary tool for understanding genome evolution, identifying functionally important sequences, and reconstructing the T

comparative genomics genome sequencing synteny ortholog paralog conserved element
Z_4_08 Verified Molecular Biology

Z_4_08 — The Ribosome: The Molecular Machine of Translation

The ribosome — the massive molecular machine responsible for translating the genetic information encoded in messenger RNA (mRNA) into functional proteins — is arguably the most important macromolecular complex in all of

ribosome translation protein synthesis rRNA Ramakrishnan Steitz
Z_4_06 Verified Molecular Biology

Z_4_06 — Psychedelic Neurochemistry: 5-HT2A, Tryptamines, and Molecular Mechanisms

Psychedelic neurochemistry — the molecular-level study of how psychedelic compounds alter brain function to produce their characteristic effects (visual hallucinations, synesthesia, ego dissolution, mystical-type experie

psychedelics 5-HT2A receptor serotonin tryptamines psilocybin LSD
Z_0_00 Molecular Biology

Z_0_00 — Molecular Biology & Genomics: Section Summary

Q_4_18 Verified Cosmology & Physics

Q_4_18 — Spectroscopy: Principles, Methods, and Applications

Spectroscopy — the study of the interaction between matter and electromagnetic radiation — is one of the most powerful and versatile analytical methods in all of science. From Joseph von Fraunhofer's discovery of dark ab

spectroscopy absorption emission Fraunhofer lines Kirchhoff Bunsen
Q_2_13 Verified Cosmology & Physics

Q_2_13 — Interstellar Medium, Dust, and Nebulae

The space between stars is far from empty — the interstellar medium (ISM) is a complex, dynamic ecosystem of gas, dust, magnetic fields, and cosmic rays that pervades galaxies and plays a central role in stellar birth, d

interstellar medium ISM interstellar dust nebula emission nebula planetary nebula
Verified

INTERDOC_62 — Chemical Language Systems: Information Encoding from Microbes to Consciousness

Bacterial quorum sensing molecules encode population-density commands with combinatorial logic-gate precision (Bassler and Losick, 2006); microbial short-chain fatty acids (SCFAs) direct host immune programming, epigenet

quorum sensing chemical grammar microbial communication short-chain fatty acids neurotransmitters psychedelic pharmacology
Credible

INTERDOC_10 — Serpent-DNA-Consciousness Thread

The twin-serpent-on-axis motif appears across every major civilization without documented contact: the Gudea Libation Vase of Ningishzida (Louvre AO 190, ~2150–2120 BCE, Sumer), the Greek caduceus of Hermes (~8th century

serpent symbolism DNA double helix caduceus kundalini Ningishzida ouroboros
Verified

INTERDOC_11 — Mitochondrial Eve, Y-Chromosomal Adam, and the Convergence Problem

Mitochondrial Eve — the most recent common ancestor (MRCA) of all living humans through an unbroken maternal line — was identified through mtDNA analysis by Rebecca Cann, Mark Stoneking, and Allan Wilson at UC Berkeley i

mitochondrial Eve Y-chromosomal Adam coalescent theory most recent common ancestor MRCA molecular clock
G_2_16 Credible Modern Frameworks

G_2_16 — Phylogenetic Methods in Material Culture Analysis

Phylogenetic methods — originally developed in evolutionary biology to reconstruct the branching history of species from shared inherited characteristics — have been adapted for analyzing the evolutionary (descent-with-m

phylogenetics cladistics cultural phylogeny material culture tree branching
ZD_4_08 Verified Information & Computation

ZD_4_08 — Bioinformatics and Computational Biology

Bioinformatics — the application of computational methods to biological data, especially molecular sequences — has become indispensable to modern biology. The field emerged from the convergence of molecular biology's dat

bioinformatics computational biology sequence alignment BLAST genome assembly phylogenetics
L_4_05 Verified Genetics & Origins

L_4_05 — Paleogenomics Methods and Ancient DNA

Paleogenomics — the study of ancient genomes — has transformed archaeology, anthropology, and evolutionary biology over the past two decades, recognized by the 2022 Nobel Prize in Physiology or Medicine awarded to Svante

paleogenomics ancient DNA aDNA ancient DNA extraction petrous bone DNA degradation
L_4_14 Verified Genetics & Origins

L_4_14 — Ancient Pathogen Genomics

Ancient pathogen genomics — the recovery, sequencing, and analysis of pathogen DNA from archaeological remains — has revolutionized our understanding of past pandemics, pathogen evolution, and human-disease coevolution.

ancient DNA paleogenomics Yersinia pestis Black Death Justinianic plague ancient tuberculosis
R_4_05 Verified Biology & Evolution

R_4_05 — Seed Plants and Angiosperm Evolution

Angiosperms (flowering plants) are the most species-rich and ecologically dominant group of land plants, comprising roughly 300,000–400,000 species — over 90% of all living plant species. Their origin and rapid diversifi

seed plants spermatophytes angiosperms flowering plants gymnosperm Cretaceous terrestrial revolution