RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,623 Citations 34,854 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

60 results for "genome" — page 2 of 3

Z_2_21 Verified Molecular Biology

Z_2_21 — Epigenetic Aging Clocks

Epigenetic aging clocks are mathematical models that use patterns of DNA methylation at specific CpG dinucleotides across the genome to estimate an individual's biological age with remarkable accuracy — typically within

epigenetic clock DNA methylation biological age Horvath clock GrimAge aging
Z_2_09 Molecular Biology

Z_2_09 — Mitochondrial Genetics and Diseases

Human mitochondrial DNA (mtDNA) is a 16,569-bp circular genome encoding 37 genes: 13 proteins (all subunits of the oxidative phosphorylation/OXPHOS complexes I, III, IV, and V), 22 transfer RNAs, and 2 ribosomal RNAs. Un

mitochondrial genetics mtDNA mitochondrial DNA mitochondrial disease oxidative phosphorylation OXPHOS
Z_2_16 Verified Molecular Biology

Z_2_16 — Cancer Genomics & Precision Oncology

Cancer genomics — the comprehensive analysis of the genetic alterations that drive cancer initiation, progression, and resistance to therapy — has transformed oncology from a tissue-of-origin classification system into a

cancer genomics precision oncology tumor sequencing oncogene tumor suppressor somatic mutation
Z_2_05 Molecular Biology

Z_2_05 — Gene Therapy: History and Progress

Gene therapy — the introduction, alteration, or replacement of genetic material within a patient's cells to treat or cure disease — has evolved from a speculative concept to an approved clinical reality over five decades

gene therapy gene replacement viral vector adeno-associated virus AAV lentivirus
Z_1_08 Molecular Biology

Z_1_08 — Transposons and Mobile Genetic Elements

Transposable elements (TEs, transposons) — segments of DNA that can move or copy themselves to new genomic locations — are among the most abundant and influential components of eukaryotic genomes. Discovered by Barbara M

transposon mobile genetic element transposable element jumping gene Barbara McClintock retrotransposon
Z_1_01 Molecular Biology

Z_1_01 — ENCODE Project, Non-Coding DNA & Epigenetics

The human genome is ~3.2 billion base pairs long, but only ~1.5% encodes proteins. The remaining ~98.5% was once dismissed as "junk DNA." The ENCODE Project (2003–present) revealed that at least 80% of the genome has bio

ENCODE non-coding DNA junk DNA epigenetics regulatory elements endogenous retrovirus
Z_1_09 Molecular Biology

Z_1_09 — Copy Number Variation and Structural Genomics

Copy number variations (CNVs) — segments of DNA ranging from ~1 kilobase to several megabases that are present in variable numbers across individuals — represent the most impactful form of genetic variation in the human

copy number variation CNV structural variation deletion duplication inversion
Z_4_01 Molecular Biology

Z_4_01 — Human Microbiome, Gut-Brain Axis, and the Holobiont Concept

The human microbiome — the ~38 trillion microbial cells (bacteria, archaea, fungi, viruses) inhabiting the human body — constitutes a co-evolved ecosystem that profoundly influences health, immunity, metabolism, developm

microbiome gut-brain axis holobiont microbiota bacteria gut flora
ZB_2_19 Verified Ecology & Biology

ZB_2_19 — Epigenetics & Chromatin Modification

Epigenetics — literally "above genetics" — encompasses heritable changes in gene expression that occur without alterations to the DNA sequence itself. The term was coined by Conrad Hal Waddington in 1942 to describe how

epigenetics DNA methylation histone modification chromatin remodeling gene expression transgenerational inheritance
G_2_08 Verified Modern Frameworks

G_2_08 — Archaeogenetics — DNA Revolution in Prehistory

Archaeogenetics — the extraction and analysis of ancient DNA (aDNA) from archaeological human, animal, and plant remains — has revolutionized our understanding of human migration, population structure, admixture, kinship

archaeogenetics ancient DNA aDNA paleogenomics genome migration
O_5_01 Earth Anomalies

O_5_01 — Permafrost, Cryosphere, and Frozen Time Capsules

Permafrost — permanently frozen ground covering approximately 25% of the Northern Hemisphere's land surface — is simultaneously a geological archive, a biological deep freeze, and a ticking carbon time bomb. Ice cores ex

permafrost cryosphere ice core paleoclimatology ancient virus Pithovirus
ZD_4_08 Verified Information & Computation

ZD_4_08 — Bioinformatics and Computational Biology

Bioinformatics — the application of computational methods to biological data, especially molecular sequences — has become indispensable to modern biology. The field emerged from the convergence of molecular biology's dat

bioinformatics computational biology sequence alignment BLAST genome assembly phylogenetics
L_1_01 Genetics & Origins

L_1_01 — Ancient DNA & Population Genetics

Modern paleogenomics has shown that human evolution was shaped by interbreeding, population structure, and repeated demographic turnover rather than a simple single-line progression. Ancient DNA revealed previously unkno

Denisovans Denisova Cave Svante Pääbo Nobel Prize ancient DNA aDNA
L_1_08 Genetics & Origins

L_1_08 — Denisovans — Archaic Hominin Deep Dive

Denisovans are an extinct group of archaic hominins identified primarily through ancient DNA analysis rather than traditional fossil morphology — making them history's first hominins to be discovered by genetics. In 2010

Denisovans Denisova Cave archaic hominin Homo denisova introgression admixture
L_4_06 Verified Genetics & Origins

L_4_06 — Epigenetics and Transgenerational Inheritance

Epigenetics — the study of heritable changes in gene expression that occur without alterations to the DNA sequence itself — has transformed modern biology by revealing a layer of regulatory information "above" the genome

epigenetics DNA methylation histone modification chromatin transgenerational inheritance imprinting
L_2_03 Genetics & Origins

L_2_03 — Ancient African Genetics

Africa harbors the greatest human genetic diversity on Earth — a direct consequence of being the continent of human origin, where populations have accumulated genetic variation for ~300,000+ years. Modern African populat

African genetics ancient African DNA African population history Bantu expansion Khoisan genetics deep population structure
L_3_06 Genetics & Origins

L_3_06 — Genetics of Intelligence and Cognition

The genetics of intelligence — one of the most studied yet contentious areas in behavioral genetics — has established that cognitive ability, as measured by standardized tests, has a substantial heritable component (~50–

intelligence genetics cognitive ability IQ heritability GWAS intelligence polygenic score educational attainment
L_3_17 Verified Genetics & Origins

L_3_17 — Endogenous Retroviruses (HERVs) in the Human Genome

Human endogenous retroviruses (HERVs) — remnants of ancient retroviral infections that integrated into the germline DNA of human ancestors and have been vertically transmitted through the host genome for millions of year

endogenous retroviruses HERVs HERV-K HERV-W syncytin retroviral integration
L_3_10 Verified Genetics & Origins

L_3_10 — Telomeres Aging and Longevity Genetics

Telomeres — the repetitive DNA sequences (TTAGGG in vertebrates) capping the ends of linear chromosomes — protect genome integrity by preventing chromosome ends from being recognized as double-strand breaks and triggerin

telomere telomerase aging senescence Hayflick limit shelterin
L_5_05 Verified Genetics & Origins

L_5_05 — Epigenetic Clocks: Measuring Biological Age

Epigenetic clocks are mathematical models that estimate biological age — the physiological age of an organism's cells and tissues — based on DNA methylation patterns at specific CpG sites (regions where a cytosine nucleo

epigenetic clock DNA methylation biological age Horvath clock Hannum clock GrimAge