RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

12 results for "metagenomics"

Z_5_02 Verified Molecular Biology

Z_5_02 — Metagenomics and Environmental DNA

Metagenomics — the sequencing and analysis of genetic material recovered directly from environmental samples without culturing organisms — has revealed that the vast majority of Earth's microbial diversity was invisible

metagenomics environmental DNA eDNA shotgun sequencing 16S rRNA amplicon
ZB_3_21 Verified Ecology & Biology

ZB_3_21 — Soil Microbiome

The soil microbiome encompasses the entire community of microorganisms inhabiting soil — bacteria, archaea, fungi, protists, and viruses — constituting the most biodiverse ecosystem on Earth. [KEY FINDING] A single gram

soil microbiome rhizosphere mycorrhiza bacteria fungi archaea
L_5_09 Verified Genetics & Origins

L_5_09 — Human Microbiome Co-Evolution: Ancient Gut Companions

The human microbiome — the trillions of bacteria, archaea, fungi, and viruses that inhabit our bodies, particularly the gastrointestinal tract — is not merely a passive inhabitant but a co-evolved partner that has shaped

microbiome gut bacteria co-evolution Helicobacter pylori human migration paleomicrobiology
R_5_08 Verified Biology & Evolution

R_5_08 — Human Microbiome: Gut Ecology and Symbiotic Partnerships

The human microbiome — the vast community of trillions of microorganisms (bacteria, archaea, fungi, viruses) that inhabit the human body, primarily the gastrointestinal tract — is now recognized as a critical organ-like

microbiome gut bacteria symbiosis probiotics dysbiosis gut-brain axis
ZF_2_07 Verified Oceanography

ZF_2_07 — Marine Microbiology and Plankton

Marine microorganisms — bacteria, archaea, protists, viruses, and microscopic algae — constitute the invisible foundation of ocean life, driving global biogeochemical cycles, producing roughly half of the world's oxygen,

marine microbiology plankton phytoplankton zooplankton cyanobacteria diatom
ZF_2_14 Verified Oceanography

ZF_2_14 — Marine Microbiology: Deep-Sea Viruses and Bacterial Ecology

The deep ocean harbors the largest and most diverse microbial ecosystem on Earth — a vast realm of bacteria, archaea, and viruses that drive global biogeochemical cycles, recycle organic matter, and sustain life in condi

marine microbiology deep-sea viruses bacteriophage marine bacteria viral shunt biogeochemical cycling
Z_5_22 Verified Molecular Biology

Z_5_22 — Bacteriophage Biology: Viruses That Shape the Microbial World

Bacteriophages (phages) — viruses that exclusively infect bacteria — are the most abundant biological entities on Earth, with an estimated global population of ~10³¹ particles, outnumbering bacteria by approximately 10:1

bacteriophage phage therapy phage biology virome microbiome horizontal gene transfer
ZB_5_03 Verified Ecology & Biology

ZB_5_03 — Microbiome Ecology

The microbiome — the collective genomes of the trillions of microorganisms (bacteria, archaea, fungi, viruses) inhabiting a host organism or environment — has emerged as one of the most transformative research areas in 2

microbiome gut microbiota gut-brain axis dysbiosis Human Microbiome Project metagenomics
G_4_17 Verified Modern Frameworks

G_4_17 — Microbiome Archaeology — Ancient Gut and Soil Microbes

Microbiome archaeology — the extraction and analysis of ancient microbial communities from archaeological materials (dental calculus, coprolites, mummified remains, soil sediments, ceramics) — has emerged since ~2012 as

microbiome ancient microbiome dental calculus paleomicrobiology metagenomics coprolite
L_5_01 Verified Genetics & Origins

L_5_01 — Human Microbiome and Co-Evolution

The human microbiome — the aggregate community of microorganisms (bacteria, archaea, fungi, viruses, protists) living on and within the human body — comprises roughly 38 trillion microbial cells (Sender et al., 2016, Cel

microbiome gut bacteria metagenomics holobiont dysbiosis Firmicutes
L_5_04 Verified Genetics & Origins

L_5_04 — Ancient Microbiome and Paleomicrobiology

Paleomicrobiology — the study of ancient microorganisms through the application of molecular techniques (ancient DNA extraction, metagenomics, proteomics) to archaeological and paleontological material — has revolutioniz

microbiome paleomicrobiology ancient DNA aDNA dental calculus coprolite
S_2_11 Verified Future Technology

S_2_11 — Bioinformatics: Computational Genomics and Drug Discovery

Bioinformatics — the application of computational methods to biological data — has become indispensable to modern biology and medicine, driven by the exponential growth of genomic, transcriptomic, proteomic, and metabolo

bioinformatics computational genomics sequence alignment BLAST genome assembly phylogenomics