RESEARCH BASE

Search 3,721 documents across 34 fields — every claim tier-rated by evidence

3,721 Documents 34 Sections 43,625 Citations 34,852 Keywords Indexed 4 Evidence Tiers

3,633 are the core, quality-scored corpus (34 lettered sections — see How We Work); the remaining 88 are cross-corpus synthesis documents (68 InterDocs, 12 Connections, 8 Theories) also indexed here.

396 results for "genome evolution" — page 1 of 20

Z_1_16 Verified Molecular Biology

Z_1_16 — Transposable Elements: Jumping Genes and Genome Evolution

Transposable elements (TEs) — sequences of DNA capable of moving ("jumping") from one genomic location to another — constitute approximately 45% of the human genome and up to 85% of the maize genome, making them the sing

transposable elements jumping genes Barbara McClintock retrotransposons DNA transposons Alu elements
Z_1_18 Verified Molecular Biology

Z_1_18 — Junk DNA & the ENCODE Controversy: Function, Noise, and the Human Genome

The term "junk DNA" — coined by Susumu Ohno (1972) to describe non-coding DNA sequences in eukaryotic genomes that appeared to have no functional role — ignited one of the most contentious debates in modern genomics: how

junk DNA ENCODE non-coding DNA transposable elements selfish DNA C-value paradox
Z_1_11 Verified Molecular Biology

Z_1_11 — Polyploidy and Genome Duplication

Polyploidy — the possession of more than two complete sets of chromosomes — is a major force in genome evolution, particularly in plants and some animal lineages. Susumu Ohno (1970) proposed that whole genome duplication

polyploidy genome duplication whole genome duplication WGD autopolyploidy allopolyploidy
R_3_12 Verified Biology & Evolution

R_3_12 — Evolution of Sex and Reproduction

Sex — the rearrangement of genetic material from two parents to produce genetically unique offspring — is one of the most fundamental yet puzzling features of life. Sexual reproduction involves enormous costs: the "twofo

evolution of sex sexual reproduction asexual reproduction meiosis recombination Red Queen hypothesis
R_2_14 Verified Biology & Evolution

R_2_14 — Recent Human Evolution: Lactase Persistence, Altitude Adaptation, and Malaria Resistance

Human evolution did not stop with the emergence of Homo sapiens ~300,000 years ago — natural selection has continued to shape human biology in response to agriculture, diet, disease, climate, and altitude, producing some

recent human evolution lactase persistence LCT gene altitude adaptation EPAS1 HIF pathway
R_1_07 Verified Biology & Evolution

R_1_07 — Viruses as Evolutionary Drivers — Endogenous Retroviruses and Genomic Integration

Viruses are not merely disease agents — they are fundamental architects of evolution. The human genome contains approximately ~8% endogenous retroviral (ERV) sequences (~100,000 ERV fragments), meaning roughly eight time

virus retrovirus endogenous retrovirus ERV HERV viral DNA
R_1_16 Verified Biology & Evolution

R_1_16 — Endosymbiotic Theory: Modern Developments in Organelle Evolution

Endosymbiotic theory — the proposition that mitochondria and chloroplasts originated as free-living bacteria that were engulfed by ancestral eukaryotic cells and subsequently became obligate intracellular symbionts — is

endosymbiosis Lynn Margulis mitochondria chloroplast eukaryote origin serial endosymbiotic theory
L_3_18 Verified Genetics & Origins

L_3_18 — Horizontal Gene Transfer in Eukaryotes

Horizontal gene transfer (HGT) — the movement of genetic material between organisms through mechanisms other than vertical parent-to-offspring inheritance — was long considered a predominantly prokaryotic phenomenon, cen

horizontal gene transfer lateral gene transfer HGT LGT eukaryotes introgression
R_5_18 Verified Biology & Evolution

R_5_18 — Synthetic Biology & Artificial Genomes

Synthetic biology is an interdisciplinary field that applies engineering principles — standardization, modular design, abstraction hierarchies — to biological systems, with the ultimate goal of designing and constructing

synthetic biology artificial genome JCVI-syn3.0 minimal cell Craig Venter xenobiology
Z_3_04 Verified Molecular Biology

Z_3_04 — Comparative Genomics and Cross-Species Analysis

Comparative genomics — the systematic comparison of genome sequences across species — has become the primary tool for understanding genome evolution, identifying functionally important sequences, and reconstructing the T

comparative genomics genome sequencing synteny ortholog paralog conserved element
Z_1_08 Verified Molecular Biology

Z_1_08 — Transposons and Mobile Genetic Elements

Transposable elements (TEs, transposons) — segments of DNA that can move or copy themselves to new genomic locations — are among the most abundant and influential components of eukaryotic genomes. Discovered by Barbara M

transposon mobile genetic element transposable element jumping gene Barbara McClintock retrotransposon
L_3_17 Verified Genetics & Origins

L_3_17 — Endogenous Retroviruses (HERVs) in the Human Genome

Human endogenous retroviruses (HERVs) — remnants of ancient retroviral infections that integrated into the germline DNA of human ancestors and have been vertically transmitted through the host genome for millions of year

endogenous retroviruses HERVs HERV-K HERV-W syncytin retroviral integration
U_1_05 Verified Art, Music & Culture

U_1_05 — Musical Instruments: Archaeology & Evolution

Musical instruments are among humanity's oldest manufactured artifacts, with bone flutes from the Swabian Jura (southern Germany) dating to ~40,000 BP — contemporary with the earliest figurative art and suggesting that m

musical instruments archaeology bone flute Divje Babe Jiahu lyre of Ur
U_4_03 Verified Art, Music & Culture

U_4_03 — Cultural Evolution — Dual Inheritance and Cumulative Culture

Cultural evolution theory applies Darwinian principles — variation, selection, inheritance — to the transmission and transformation of cultural information (beliefs, technologies, norms, institutions). The dual inheritan

cultural evolution dual inheritance gene-culture coevolution cumulative culture Boyd Richerson memetics
ZH_1_11 Verified Archaeoastronomy

ZH_1_11 — Copernicus, Kepler, and the Astronomical Revolution

The astronomical revolution of the 16th and 17th centuries — transforming humanity's understanding of its place in the cosmos from an Earth-centered (geocentric) to a Sun-centered (heliocentric) model — is one of the mos

Copernicus Kepler heliocentrism Ptolemy geocentrism De revolutionibus
Z_5_21 Verified Molecular Biology

Z_5_21 — Mobile Genetic Elements: Transposons, Retrotransposons, and Genomic Plasticity

Mobile genetic elements (MGEs) — DNA sequences capable of moving within and between genomes — constitute a staggering ~45% of the human genome, far exceeding the ~1.5% that encodes proteins. Discovered by Barbara McClint

transposons mobile genetic elements jumping genes retrotransposons barbara mcclintock LINE elements
Z_5_15 Verified Molecular Biology

Z_5_15 — Synthetic Genomes: Designing and Building Life from Scratch

Synthetic genomics — the design, construction, and transplantation of complete genomes assembled from chemically synthesized oligonucleotides — represents one of the most ambitious enterprises in modern biology, with the

synthetic genome Craig Venter Mycoplasma mycoides JCVI-syn3.0 minimal genome synthetic biology
Z_1_10 Verified Molecular Biology

Z_1_10 — Chromosome Evolution and Karyotype

Karyotype — the number, size, and morphology of chromosomes in a cell — varies enormously across species, from n=1 in the ant Myrmecia pilosula to n=630 in the fern Ophioglossum reticulatum. Humans have 2n=46 (23 pairs),

chromosome evolution karyotype chromosome number Robertsonian translocation chromosome fusion human chromosome 2
K_3_07 Credible Consciousness

K_3_07 — Evolution of Consciousness

The question of when, how, and why consciousness evolved is one of the deepest unsolved problems at the intersection of biology, neuroscience, and philosophy. Two major recent proposals have attempted to identify the evo

evolution of consciousness consciousness origins sentience evolution Cambrian consciousness nervous system evolution neural correlates evolution
E_2_19 Verified Cataclysms & Chronology

E_2_19 — Volcanism and Human Evolution: Eruptions That Shaped Our Species

The relationship between volcanism and human evolution operates on multiple scales and through multiple mechanisms — from the geological forces that created the landscapes where hominins evolved, to the catastrophic erup

volcanism human evolution Toba volcanic winter bottleneck tephra